U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PRP39-2 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834683, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
PRP39-2
Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT5G46400
Locus tag
AT5G46400
See related
Araport:AT5G46400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT PRP39-2; MPL12.20; MPL12_20
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PRP39-2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (18819933..18824782)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Peptidase S41 family protein Neighboring gene uncharacterized protein Neighboring gene SCP1-like small phosphatase 4 Neighboring gene 16S rRNA processing protein RimM family Neighboring gene Ribosomal protein L32e Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a. Kanno T, et al. Genetics, 2017 Dec. PMID 28971960, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001344676.1
NM_001344677.1
NM_124010.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_199452.2
  • PRP39-2; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04080.1); Has 41473 Blast hits to 19964 proteins in 957 species: Archae - 8; Bacteria - 2112; Metazoa - 13232; Fungi - 4812; Plants - 3812; Viruses - 173; Other Eukaryotes - 17324 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18819933..18824782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124010.3 → NP_199452.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199452.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KHG8, Q9FL22
    UniProtKB/TrEMBL
    A0A178U9B3, A0A654G9H1

  2. NM_001344676.1 → NP_001330626.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBD6

  3. NM_001344677.1 → NP_001330627.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBD6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.