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Peptidase S41 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834682, updated on 18-Sep-2024

Summary

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Official Full Name
Peptidase S41 family protein
Primary source
TAIR:AT5G46390
Locus tag
AT5G46390
See related
Araport:AT5G46390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MPL12.19; MPL12_19
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (18816585..18819462)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ca2+ activated outward rectifying K+ channel 2 Neighboring gene Serine/Threonine-kinase, putative (DUF1296) Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_124009.2
NM_203164.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast thylakoid lumen HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in thylakoid lumen HDA PubMed 

General protein information

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Preferred Names
Peptidase S41 family protein
NP_199451.2
  • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974893.1
  • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18816585..18819462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_203164.3 → NP_974893.1  Peptidase S41 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974893.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KHG6, Q8W484, Q9FL23
    UniProtKB/TrEMBL
    A0A178UN93, A0A5S9YC27
    Conserved Domains (3) summary
    cd07560
    Location:307 → 466
    Peptidase_S41_CPP; C-terminal processing peptidase; serine protease family S41
    cd00988
    Location:197 → 286
    PDZ_CTP_protease; PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for ...
    TIGR00225
    Location:151 → 466
    prc; C-terminal peptidase (prc)

  2. NM_124009.2 → NP_199451.2  Peptidase S41 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199451.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UN93, A0A5S9YC27
    Conserved Domains (2) summary
    cd00988
    Location:197 → 286
    PDZ_CTP_protease; PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for ...
    cl02526
    Location:276 → 395
    Peptidase_S41; C-terminal processing peptidase family S41
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KHG6.1

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