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FKBP13 FK506-binding protein 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834607, updated on 18-Sep-2024

Summary

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Official Symbol
FKBP13
Official Full Name
FK506-binding protein 13
Primary source
TAIR:AT5G45680
Locus tag
AT5G45680
See related
Araport:AT5G45680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATFKBP13; FK506 BINDING PROTEIN 13; FK506-binding protein 13; MRA19.7; MRA19_7
Summary
Peptidyl-Prolyl Isomerase located in chloroplast thylakoid lumen
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Genomic context

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See FKBP13 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (18530834..18532337)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene adenine phosphoribosyltransferase Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene histone acetyltransferase (DUF1264) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immunophilin AtFKBP13 sustains all peptidyl-prolyl isomerase activity in the thylakoid lumen from Arabidopsis thaliana deficient in AtCYP20-2. Edvardsson A, et al. Biochemistry, 2007 Aug 21. PMID 17655280
  2. Peptidyl-prolyl isomerase activity in chloroplast thylakoid lumen is a dispensable function of immunophilins in Arabidopsis thaliana. Ingelsson B, et al. Plant Cell Physiol, 2009 Oct. PMID 19717822
  3. A chloroplast FKBP interacts with and affects the accumulation of Rieske subunit of cytochrome bf complex. Gupta R, et al. Proc Natl Acad Sci U S A, 2002 Nov 26. PMID 12424338, Free PMC Article
  4. Identification of potential targets for thylakoid oxidoreductase AtVKOR/LTO1 in chloroplasts. Lu Y, et al. Protein Pept Lett, 2014. PMID 25412899
  5. Thioredoxin targets of the plant chloroplast lumen and their implications for plastid function. Hall M, et al. Proteomics, 2010 Mar. PMID 20049866

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtFKBP13-lacking mutants showed a dramatic decrease in peptidyl-prolyl isomerase activity.
    Title: Peptidyl-prolyl isomerase activity in chloroplast thylakoid lumen is a dispensable function of immunophilins in Arabidopsis thaliana.
  2. None of the immunophilins in the chloroplast thylakoid lumen of Arabidopsis except AtCYP20-2 and AtFKBP13 appear to possess prolyl isomerase activity toward peptide substrates.
    Title: Immunophilin AtFKBP13 sustains all peptidyl-prolyl isomerase activity in the thylakoid lumen from Arabidopsis thaliana deficient in AtCYP20-2.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_123935.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid lumen HDA PubMed 
located_in plastid HDA PubMed 
located_in thylakoid lumen HDA PubMed 

General protein information

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Preferred Names
FK506-binding protein 13
NP_199380.1
  • FK506-binding protein 13 (FKBP13); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 16-2 (TAIR:AT4G39710.1); Has 10267 Blast hits to 9756 proteins in 1768 species: Archae - 130; Bacteria - 5575; Metazoa - 1746; Fungi - 494; Plants - 780; Viruses - 0; Other Eukaryotes - 1542 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18530834..18532337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123935.5 → NP_199380.1  FK506-binding protein 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199380.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8M8T4, Q9SCY2
    UniProtKB/TrEMBL
    A0A5S9YBB4, A0A7G2FDW7
    Conserved Domains (1) summary
    COG0545
    Location:88 → 206
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SCY2.2

Gene LinkOut

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