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GAS41 YEATS family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834599, updated on 18-Sep-2024

Summary

Official Symbol
GAS41
Official Full Name
YEATS family protein
Primary source
TAIR:AT5G45600
Locus tag
AT5G45600
See related
Araport:AT5G45600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
GLIOMAS 41; homolog of yeast YAF9 a; K2N11.8; K2N11_8; TAF14B; TBP-ASSOCIATED FACTOR 14B; YAF9a
Summary
The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. It negatively regulates flowering by controlling the H4 acetylation levels in the FLC and FT chromatin.
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Genomic context

See GAS41 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (18487798..18489869)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L35 Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene pseudo

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001203546.1
NM_123928.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone H4 acetyltransferase activity IGI
Inferred from Genetic Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of NuA4 histone acetyltransferase complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of Swr1 complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in nucleus IPI
Inferred from Physical Interaction
more info
PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
YEATS family protein
NP_001190475.1
  • GLIOMAS 41 (GAS41); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: TBP-associated factor 14 (TAIR:AT2G18000.2).
NP_199373.1
  • GLIOMAS 41 (GAS41); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: TBP-associated factor 14 (TAIR:AT2G18000.2); Has 807 Blast hits to 807 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 350; Fungi - 284; Plants - 64; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18487798..18489869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123928.4NP_199373.1  YEATS family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199373.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KEK5, Q9FH40
    UniProtKB/TrEMBL
    A0A5S9YBM9, A0A654G8G2
    Conserved Domains (1) summary
    cd16910
    Location:44175
    YEATS_TFIID14_like; YEATS domain found in transcription initiation factor TFIID subunit 14 and similar proteins
  2. NM_001203546.1NP_001190475.1  YEATS family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190475.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G8G2
    Conserved Domains (1) summary
    pfam03366
    Location:66145
    YEATS; YEATS family