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Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834592, updated on 18-Sep-2024

Summary

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Official Full Name
Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein
Primary source
TAIR:AT5G45560
Locus tag
AT5G45560
See related
Araport:AT5G45560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MFC19.23; MFC19_23
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Genomic context

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Location:
chromosome: 5
Exon count:
21
Sequence:
Chromosome: 5; NC_003076.8 (18465283..18470944)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF594) Neighboring gene Mob1/phocein family protein Neighboring gene Ulp1 protease family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_123924.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein
NP_199369.2
  • Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein; FUNCTIONS IN: lipid binding; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ENHANCED DISEASE RESISTANCE 2 (TAIR:AT4G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18465283..18470944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344631.1 → NP_001332734.1  Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UA77, A0A1P8BHW3, A0A5S9YBH5

  2. NM_123924.3 → NP_199369.2  Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199369.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZF6, Q9FH45
    UniProtKB/TrEMBL
    A0A178UA77, A0A5S9YBH5
    Conserved Domains (4) summary
    cd00177
    Location:192 → 368
    START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
    smart00233
    Location:4 → 110
    PH; Pleckstrin homology domain
    PLN00188
    Location:1 → 719
    PLN00188; enhanced disease resistance protein (EDR2); Provisional
    pfam07059
    Location:503 → 706
    DUF1336; Protein of unknown function (DUF1336)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZF6.1

Gene LinkOut

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