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RL2 Root hair defective 3 GTP-binding protein (RHD3) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834552, updated on 18-Sep-2024

Summary

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Official Symbol
RL2
Official Full Name
Root hair defective 3 GTP-binding protein (RHD3)
Primary source
TAIR:AT5G45160
Locus tag
AT5G45160
See related
Araport:AT5G45160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K18C1.4; K18C1_4; RHD-like2
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Genomic context

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See RL2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Sequence:
Chromosome: 5; NC_003076.8 (18264616..18270296)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nuclear RNA polymerase C2 Neighboring gene RNAse THREE-like protein 3 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene Cyclin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An Arabidopsis reticulon and the atlastin homologue RHD3-like2 act together in shaping the tubular endoplasmic reticulum. Lee H, et al. New Phytol, 2013 Jan. PMID 23163512
  2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_123884.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Root hair defective 3 GTP-binding protein (RHD3)
NP_199329.1
  • Root hair defective 3 GTP-binding protein (RHD3); FUNCTIONS IN: GTP binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 535 Blast hits to 521 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 186; Plants - 129; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18264616..18270296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123884.4 → NP_199329.1  Root hair defective 3 GTP-binding protein (RHD3) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199329.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKE9
    UniProtKB/TrEMBL
    A0A178ULP7
    Conserved Domains (1) summary
    pfam05879
    Location:46 → 791
    RHD3; Root hair defective 3 GTP-binding protein (RHD3)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FKE9.1

Gene LinkOut

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