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BRG1 SBP (S-ribonuclease binding protein) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834543, updated on 18-Sep-2024

Summary

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Official Symbol
BRG1
Official Full Name
SBP (S-ribonuclease binding protein) family protein
Primary source
TAIR:AT5G45100
Locus tag
AT5G45100
See related
Araport:AT5G45100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BOI-related gene 1; K17O22.9; K17O22_9
Summary
Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.
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Genomic context

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See BRG1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (18218586..18220047)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene phloem protein 2-A7 Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene NPR1-like protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dux activates metabolism-lactylation-MET network during early iPSC reprogramming with Brg1 as the histone lactylation reader. Hu X, et al. Nucleic Acids Res, 2024 Jun 10. PMID 38512058, Free PMC Article
  2. The Arabidopsis RING Domain Protein BOI Inhibits Flowering via CO-dependent and CO-independent Mechanisms. Nguyen KT, et al. Mol Plant, 2015 Dec 7. PMID 26298008
  3. The Arabidopsis Botrytis Susceptible1 Interactor defines a subclass of RING E3 ligases that regulate pathogen and stress responses. Luo H, et al. Plant Physiol, 2010 Dec. PMID 20921156, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dux activates metabolism-lactylation-MET network during early iPSC reprogramming with Brg1 as the histone lactylation reader.
    Title: Dux activates metabolism-lactylation-MET network during early iPSC reprogramming with Brg1 as the histone lactylation reader.
  2. BOIs and CO antagonistically regulate flowering through FT and SOC1.
    Title: The Arabidopsis RING Domain Protein BOI Inhibits Flowering via CO-dependent and CO-independent Mechanisms.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_123878.3
NM_180803.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of programmed cell death IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SBP (S-ribonuclease binding protein) family protein
NP_199323.2
  • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G19700.1); Has 489 Blast hits to 489 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 2; Plants - 326; Viruses - 11; Other Eukaryotes - 39 (source: NCBI BLink).
NP_851134.1
  • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G19700.1); Has 499 Blast hits to 499 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 2; Plants - 326; Viruses - 11; Other Eukaryotes - 39 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18218586..18220047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123878.3 → NP_199323.2  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199323.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US47, A0A5S9YC87
    Conserved Domains (1) summary
    pfam13920
    Location:217 → 253
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  2. NM_180803.2 → NP_851134.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851134.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E8H0, Q9FHE4
    UniProtKB/TrEMBL
    A0A178US47, A0A5S9YC87
    Conserved Domains (1) summary
    pfam13920
    Location:244 → 280
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FHE4.1

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