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CYTC6A Cytochrome c [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834535, updated on 18-Sep-2024

Summary

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Official Symbol
CYTC6A
Official Full Name
Cytochrome c
Primary source
TAIR:AT5G45040
Locus tag
AT5G45040
See related
Araport:AT5G45040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
cytochrome c6A; K21C13.23; K21C13_23
Summary
Encodes a Class I cytochrome c family member possessing a high structural homology with photosynthetic cytochrome c(6) from cyanobacteria, but structurally and functionally distinct through the presence of a disulfide bond.
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Genomic context

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See CYTC6A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (18175371..18176888, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene DSS1 homolog on chromosome V Neighboring gene Glutathione S-transferase family protein Neighboring gene ncRNA Neighboring gene Trypsin family protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of potential targets for thylakoid oxidoreductase AtVKOR/LTO1 in chloroplasts. Lu Y, et al. Protein Pept Lett, 2014. PMID 25412899
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_123872.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
  
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cytochrome c
NP_568640.1
  • Cytochrome c; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18175371..18176888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123872.3 → NP_568640.1  Cytochrome c [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568640.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8SKV3, Q93VA3, Q9FL93
    UniProtKB/TrEMBL
    A0A5S9YBQ0, A0A654G8L2
    Conserved Domains (1) summary
    cl21467
    Location:45 → 169
    Cytochrom_C; Cytochrome c
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93VA3.1

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