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Protein with RNI-like/FBD-like domain [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834515, updated on 18-Sep-2024

Summary

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Official Full Name
Protein with RNI-like/FBD-like domain
Primary source
TAIR:AT5G44850
Locus tag
AT5G44850
See related
Araport:AT5G44850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K21C13.2; K21C13_2
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (18108304..18109593)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA Neighboring gene polyadenylate-binding protein 1-B-binding protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_123853.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein with RNI-like/FBD-like domain
NP_199298.1
  • Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G05080.1); Has 667 Blast hits to 642 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 97; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18108304..18109593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123853.1 → NP_199298.1  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199298.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGI2, O48575
    Conserved Domains (2) summary
    smart00579
    Location:259 → 331
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:88 → 110
    LRR_2; leucine-rich repeat [structural motif]
Nucleotide Protein
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