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Terpenoid cyclases/Protein prenyltransferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834491, updated on 18-Sep-2024

Summary

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Official Full Name
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Primary source
TAIR:AT5G44630
Locus tag
AT5G44630
See related
Araport:AT5G44630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K15C23.7; K15C23_7
Summary
Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (18002996..18005849)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 18 Neighboring gene cytochrome P450, family 706, subfamily A, polypeptide 3 Neighboring gene minichromosome maintenance (MCM2/3/5) family protein Neighboring gene beta glucosidase 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers. Tholl D, et al. Plant J, 2005 Jun. PMID 15918888
  2. Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression. Hong GJ, et al. Plant Cell, 2012 Jun. PMID 22669881, Free PMC Article
  3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MYC2 directly binds to promoter of the sesquiterpene synthase gene TPS11
    Title: Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression.
  2. The florally expressed genes At5g23960 and At5g44630, are responsible for the formation of virtually all sesquiterpenes found in the Arabidopsis floral volatile blend.
    Title: Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_123830.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables (+)-alpha-barbatene synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables (+)-beta-chamigrene synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables (+)-thujopsene synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in diterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sesquiterpene biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within sesquiterpenoid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Terpenoid cyclases/Protein prenyltransferases superfamily protein
NP_199276.1
  • Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: sesquiterpene biosynthetic process, sesquiterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpenoid synthase 13 (TAIR:AT4G13300.1); Has 1689 Blast hits to 1665 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1685; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18002996..18005849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123830.3 → NP_199276.1  Terpenoid cyclases/Protein prenyltransferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199276.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A3KPF7, Q4KSH9, Q9LU03
    UniProtKB/TrEMBL
    A0A178UD70, A0A5S9YBB7
    Conserved Domains (1) summary
    cd00684
    Location:15 → 554
    Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4KSH9.2

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