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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834484, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT5G44570
Locus tag
AT5G44570
See related
Araport:AT5G44570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K15C23.1; K15C23_1
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (17964416..17966496)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Hu Z, et al. Plant Cell, 2016 Sep. PMID 27543091, Free PMC Article
  2. The MIK2/SCOOP Signaling System Contributes to Arabidopsis Resistance Against Herbivory by Modulating Jasmonate and Indole Glucosinolate Biosynthesis. Stahl E, et al. Front Plant Sci, 2022. PMID 35401621, Free PMC Article
  3. The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana. Gully K, et al. J Exp Bot, 2019 Feb 20. PMID 30715439, Free PMC Article
  4. Subtilase-mediated biogenesis of the expanded family of SERINE RICH ENDOGENOUS PEPTIDES. Yang H, et al. Nat Plants, 2023 Dec. PMID 38049516
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables LRR domain binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables receptor serine/threonine kinase binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in defense response to insect IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within mitochondria-nucleus signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in reactive oxygen species biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to herbivore IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to insect IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in extracellular region RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_001154761.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, hypocotyl, sepal, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage, LP.08 eight leaves visible; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_199270.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, hypocotyl, sepal, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage, LP.08 eight leaves visible; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17964416..17966496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161289.2 → NP_001154761.1  uncharacterized protein AT5G44570 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154761.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KAA4

  2. NM_001344565.1 → NP_001331891.1  uncharacterized protein AT5G44570 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56WV9, Q9LU09
    UniProtKB/TrEMBL
    A0A5S9YBA7

  3. NM_123824.6 → NP_199270.1  uncharacterized protein AT5G44570 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199270.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9LU09
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q56WV9.1

Gene LinkOut

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