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rRNA-processing EFG1-like protein (DUF2361) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834392, updated on 18-Sep-2024

Summary

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Official Full Name
rRNA-processing EFG1-like protein (DUF2361)
Primary source
TAIR:AT5G43720
Locus tag
AT5G43720
See related
Araport:AT5G43720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQD19.5; MQD19_5
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (17557088..17559412, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AUX/IAA transcriptional regulator family protein Neighboring gene Glycosyl hydrolase family 47 protein Neighboring gene ncRNA Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene ion channel POLLUX-like protein, putative (DUF1012)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_123738.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
rRNA-processing EFG1-like protein (DUF2361)
NP_568627.1
  • Protein of unknown function (DUF2361); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT1G04230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17557088..17559412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123738.3 → NP_568627.1  rRNA-processing EFG1-like protein (DUF2361) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568627.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FD96, Q67YA7
    Conserved Domains (1) summary
    pfam10153
    Location:39 → 148
    DUF2361; uncharacterized conserved protein (DUF2361)
Nucleotide Protein
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