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ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834329, updated on 18-Sep-2024

Summary

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Official Full Name
ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
Primary source
TAIR:AT5G43120
Locus tag
AT5G43120
See related
Araport:AT5G43120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MMG4.15; MMG4_15
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (17312543..17314579)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pumilio 14 Neighboring gene TBP-associated factor 4 Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
NP_199126.1
  • ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (TAIR:AT5G10200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17312543..17314579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344472.1 → NP_001332016.1  ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFL1, A0A654G7G1

  2. NM_123678.1 → NP_199126.1  ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199126.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G7G1, Q9FMH1
    Conserved Domains (2) summary
    sd00006
    Location:424 → 452
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:428 → 494
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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