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PUB15 Plant U-Box 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834240, updated on 18-Sep-2024

Summary

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Official Symbol
PUB15
Official Full Name
Plant U-Box 15
Primary source
TAIR:AT5G42340
Locus tag
AT5G42340
See related
Araport:AT5G42340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDH9.3; MDH9_3; Plant U-Box 15
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Genomic context

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See PUB15 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (16927893..16930532, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transcription factor IIS protein Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_123599.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant U-Box 15
NP_199049.2
  • Plant U-Box 15 (PUB15); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1); Has 7951 Blast hits to 5407 proteins in 313 species: Archae - 0; Bacteria - 45; Metazoa - 2582; Fungi - 655; Plants - 3768; Viruses - 3; Other Eukaryotes - 898 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16927893..16930532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123599.3 → NP_199049.2  Plant U-Box 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199049.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q681N2, Q9FII3
    UniProtKB/TrEMBL
    A0A178UIY7, A0A5S9YAF7, A0A7G2FJW2
    Conserved Domains (5) summary
    smart00504
    Location:293 → 356
    Ubox; Modified RING finger domain
    PLN03200
    Location:406 → 541
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00043
    Location:423 → 448
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:410 → 449
    Arm; Armadillo/beta-catenin-like repeat
    cl05301
    Location:52 → 154
    MLKL_NTD; N-terminal domain of mixed lineage kinase domain-like protein (MLKL) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q681N2.2

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