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Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834227, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin-like superfamily protein
Primary source
TAIR:AT5G42220
Locus tag
AT5G42220
See related
Araport:AT5G42220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K5J14.2; K5J14_2
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Genomic context

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Location:
chromosome: 5
Exon count:
19
Sequence:
Chromosome: 5; NC_003076.8 (16872044..16878383)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Major facilitator superfamily protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene serine carboxypeptidase-like 41

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ubiquitin ligase PUB22 targets a subunit of the exocyst complex required for PAMP-triggered responses in Arabidopsis. Stegmann M, et al. Plant Cell, 2012 Nov. PMID 23170036, Free PMC Article
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001344439.1
NM_123587.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ubiquitin-like superfamily protein
NP_199037.2
  • Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 12270 Blast hits to 6672 proteins in 779 species: Archae - 2; Bacteria - 272; Metazoa - 5255; Fungi - 1469; Plants - 2655; Viruses - 175; Other Eukaryotes - 2442 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16872044..16878383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123587.5 → NP_199037.2  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199037.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAN0, A0A654G776, A0A7G2FG29, Q8L745
    Conserved Domains (1) summary
    pfam00240
    Location:27 → 97
    ubiquitin; Ubiquitin family

  2. NM_001344439.1 → NP_001330299.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAN0, A0A654G776, A0A7G2FG29, Q8L745
    Conserved Domains (1) summary
    pfam00240
    Location:27 → 97
    ubiquitin; Ubiquitin family
Nucleotide Protein
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