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Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834199, updated on 18-Sep-2024

Summary

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Official Full Name
Ypt/Rab-GAP domain of gyp1p superfamily protein
Primary source
TAIR:AT5G41940
Locus tag
AT5G41940
See related
Araport:AT5G41940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MJC20.4; MJC20_4
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (16781858..16785609)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Mediator complex, subunit Med10 Neighboring gene GRAS family transcription factor Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene zinc finger matrin-type protein Neighboring gene Metal-dependent protein hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

  • At5g41920_Arabidopsis_lyrata_ssp._lyrata_CAN10 (e-PCR)
  • At5g41920_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
NM_123559.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ypt/Rab-GAP domain of gyp1p superfamily protein
NP_199009.2
  • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G53570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16781858..16785609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123559.5 → NP_199009.2  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199009.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UT72, A0A5S9YA55, Q67YN2
    Conserved Domains (2) summary
    COG5271
    Location:137 → 261
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cl02495
    Location:325 → 466
    RabGAP-TBC; Rab-GTPase-TBC domain
Nucleotide Protein
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