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leucine-rich repeat transmembrane protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834120, updated on 18-Sep-2024

Summary

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Official Full Name
leucine-rich repeat transmembrane protein kinase family protein
Primary source
TAIR:AT5G41180
Locus tag
AT5G41180
See related
Araport:AT5G41180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MEE6.25; MEE6_25
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Sequence:
Chromosome: 5; NC_003076.8 (16483760..16487427)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Restriction endonuclease, type II-like superfamily protein Neighboring gene purine permease 12 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene RNA-binding NOB1-like protein Neighboring gene AGAMOUS-like 75

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  3. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001344392.1
NM_123483.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
leucine-rich repeat transmembrane protein kinase family protein
NP_198934.1
  • leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G63430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16483760..16487427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123483.3 → NP_198934.1  leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198934.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YB06, A0A654G715, Q9FLL2
    Conserved Domains (4) summary
    PLN00113
    Location:91 → 645
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:148 → 171
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:29 → 70
    LRRNT_2; Leucine rich repeat N-terminal domain
    cl21453
    Location:362 → 610
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001344392.1 → NP_001332195.1  leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG86
Nucleotide Protein
Heading Accession and Version

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