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WD-40 repeat family protein / zfwd3 protein (ZFWD3) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834089, updated on 18-Sep-2024

Summary

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Official Full Name
WD-40 repeat family protein / zfwd3 protein (ZFWD3)
Primary source
TAIR:AT5G40880
Locus tag
AT5G40880
See related
Araport:AT5G40880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MHK7.11; MHK7_11
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (16378893..16381352)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uridine kinase/uracil phosphoribosyltransferase 1 Neighboring gene chloride channel A Neighboring gene ncRNA Neighboring gene Nucleotide-diphospho-sugar transferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Non-TZF Protein AtC3H59/ZFWD3 Is Involved in Seed Germination, Seedling Development, and Seed Development, Interacting with PPPDE Family Protein Desi1 in Arabidopsis. Seok HY, et al. Int J Mol Sci, 2021 Apr 29. PMID 33947021, Free PMC Article
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001344365.1
NM_123453.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
WD-40 repeat family protein / zfwd3 protein (ZFWD3)
NP_198904.1
  • WD-40 repeat family protein / zfwd3 protein (ZFWD3); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd4 protein (ZFWD4) (TAIR:AT5G49200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16378893..16381352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123453.3 → NP_198904.1  WD-40 repeat family protein / zfwd3 protein (ZFWD3) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198904.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKR9, Q9FNZ0
    UniProtKB/TrEMBL
    A0A178UB71, A0A384LLK6, A0A5S9YAD4, A0A654G6U3, C0SVR8
    Conserved Domains (4) summary
    smart00356
    Location:145 → 170
    ZnF_C3H1; zinc finger
    COG5084
    Location:68 → 170
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    sd00039
    Location:270 → 310
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:179 → 465
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. NM_001344365.1 → NP_001330275.1  WD-40 repeat family protein / zfwd3 protein (ZFWD3) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAA9, A0A7G2FCR3
    Conserved Domains (4) summary
    smart00356
    Location:116 → 141
    ZnF_C3H1; zinc finger
    COG5084
    Location:39 → 141
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    sd00039
    Location:241 → 281
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:150 → 436
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FKR9.1

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