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zinc finger (C2H2 type) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834071, updated on 18-Sep-2024

Summary

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Official Full Name
zinc finger (C2H2 type) family protein
Primary source
TAIR:AT5G40710
Locus tag
AT5G40710
See related
Araport:AT5G40710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNF13.27; MNF13_27
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (16294967..16297058)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase trithorax-like protein Neighboring gene transcriptional regulator ATRX-like protein Neighboring gene C3H4 type zinc finger protein (DUF23) Neighboring gene arabinogalactan protein 24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001344349.1
NM_123436.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc finger (C2H2 type) family protein
NP_198887.1
  • zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G63280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16294967..16297058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123436.3 → NP_198887.1  zinc finger (C2H2 type) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198887.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YA44, Q8GWF8, Q9FM27

  2. NM_001344349.1 → NP_001331724.1  zinc finger (C2H2 type) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BER0
Nucleotide Protein
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