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SGF29b SGF29 tudor-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834053, updated on 18-Sep-2024

Summary

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Official Symbol
SGF29b
Official Full Name
SGF29 tudor-like domain-containing protein
Primary source
TAIR:AT5G40550
Locus tag
AT5G40550
See related
Araport:AT5G40550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtSGF29b; MNF13.7; MNF13_7; SaGa associated Factor 29 b
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Genomic context

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See SGF29b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (16241009..16243410)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene tRNA-Asp Neighboring gene protease Do-like protein Neighboring gene Surfeit locus protein 2 (SURF2) Neighboring gene 20S proteasome beta subunit PBB2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses. Kaldis A, et al. Planta, 2011 Apr. PMID 21193996
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Two orthologs of yeast SGF29 in Arabidopsis, SGF29a and SGF29b, may work in concert with ADA2b to regulate genes in response to abiotic stress. [AtSGF29b]
    Title: Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001203513.2
NM_001344342.1
NM_123419.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SGF29 tudor-like domain-containing protein
NP_001190442.1
  • SGF29 tudor-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1).
NP_198871.2
  • SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1); Has 300 Blast hits to 300 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 107; Plants - 46; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16241009..16243410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344341.1 → NP_001330202.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA25, A0A5S9Y9Q7, A0A654G6U4
    Conserved Domains (1) summary
    pfam07039
    Location:134 → 237
    DUF1325; SGF29 tudor-like domain

  2. NM_001203513.2 → NP_001190442.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190442.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UES1, F4KHE9
    Conserved Domains (1) summary
    pfam07039
    Location:131 → 265
    DUF1325; SGF29 tudor-like domain

  3. NM_001344342.1 → NP_001330201.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA21, A0A654G6U4

  4. NM_123419.4 → NP_198871.2  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198871.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q500Z7, Q9FM42
    UniProtKB/TrEMBL
    A0A178UEP4
    Conserved Domains (1) summary
    pfam07039
    Location:134 → 268
    DUF1325; SGF29 tudor-like domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q500Z7.1

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