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RNA ligase/cyclic nucleotide phosphodiesterase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834017, updated on 18-Sep-2024

Summary

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Official Full Name
RNA ligase/cyclic nucleotide phosphodiesterase family protein
Primary source
TAIR:AT5G40190
Locus tag
AT5G40190
See related
Araport:AT5G40190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MSN9.9; MSN9_9
Summary
Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library.
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (16069043..16070044, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene receptor like protein 54 Neighboring gene Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein Neighboring gene DegP protease 9 Neighboring gene nodulin MtN21 /EamA-like transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes encoding calmodulin-binding proteins in the Arabidopsis genome. Reddy VS, et al. J Biol Chem, 2002 Mar 22. PMID 11782485
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_123383.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNA ligase/cyclic nucleotide phosphodiesterase family protein
NP_198835.1
  • RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT3G28140.1); Has 227 Blast hits to 227 proteins in 109 species: Archae - 0; Bacteria - 185; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16069043..16070044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123383.6 → NP_198835.1  RNA ligase/cyclic nucleotide phosphodiesterase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198835.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHT5, A0A5S9Y9I4, A0A654G6I9, Q9FL13
    Conserved Domains (1) summary
    cl38987
    Location:41 → 165
    2_5_RNA_ligase2; 2'-5' RNA ligase superfamily
Nucleotide Protein
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