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Peroxidase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833954, updated on 18-Sep-2024

Summary

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Official Full Name
Peroxidase superfamily protein
Primary source
TAIR:AT5G39580
Locus tag
AT5G39580
See related
Araport:AT5G39580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MIJ24.50; MIJ24_50
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (15847065..15849141, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene TLD-domain containing nucleolar protein Neighboring gene 39S ribosomal protein Neighboring gene NAC domain containing protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Coordination of five class III peroxidase-encoding genes for early germination events of Arabidopsis thaliana. Jemmat AM, et al. Plant Sci, 2020 Sep. PMID 32771166
  2. Cuticular defects lead to full immunity to a major plant pathogen. Chassot C, et al. Plant J, 2007 Mar. PMID 17257167
  3. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
  4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036908.1
NM_123320.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables lactoperoxidase activity IEA
Inferred from Electronic Annotation
more info
  
enables peroxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Peroxidase superfamily protein
NP_001031985.1
  • Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: defense response to fungus; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G64120.1); Has 3598 Blast hits to 3589 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 6; Plants - 3589; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_198774.1
  • Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: defense response to fungus, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G64120.1); Has 3879 Blast hits to 3855 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 13; Plants - 3857; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15847065..15849141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123320.4 → NP_198774.1  Peroxidase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198774.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P93724, Q9FKA4
    UniProtKB/TrEMBL
    A0A178UKT4, A0A654G6F8
    Conserved Domains (1) summary
    cd00693
    Location:26 → 318
    secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases

  2. NM_001036908.1 → NP_001031985.1  Peroxidase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031985.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KEH2
    Conserved Domains (1) summary
    cl00196
    Location:26 → 185
    plant_peroxidase_like; Heme-dependent peroxidases similar to plant peroxidases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FKA4.1

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