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F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833950, updated on 18-Sep-2024

Summary

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Official Full Name
F-box associated ubiquitination effector family protein
Primary source
TAIR:AT5G39540
Locus tag
AT5G39540
See related
Araport:AT5G39540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MIJ24.2; MIJ24_2
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (15833743..15834420, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box associated ubiquitination effector family protein
NP_198770.1
  • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 63 (TAIR:AT3G55210.1); Has 141 Blast hits to 139 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15833743..15834420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123316.1 → NP_198770.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198770.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G6C6, F4KEG7
    Conserved Domains (1) summary
    pfam08268
    Location:4 → 78
    FBA_3; F-box associated domain
Nucleotide Protein
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