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UDG4 UDP-glucose 6-dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833928, updated on 18-Sep-2024

Summary

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Official Symbol
UDG4
Official Full Name
UDP-glucose 6-dehydrogenase family protein
Primary source
TAIR:AT5G39320
Locus tag
AT5G39320
See related
Araport:AT5G39320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K3K3.170; K3K3_170; UDP-glucose dehydrogenase 4
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Genomic context

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See UDG4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (15742543..15744946)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene expansin A25 Neighboring gene expansin A24 Neighboring gene transmembrane protein, putative (DUF1163) Neighboring gene histidine-containing phosphotransmitter 3 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis of the UDP-glucose dehydrogenase gene family in Arabidopsis, a key enzyme for matrix polysaccharides in cell walls. Klinghammer M, et al. J Exp Bot, 2007. PMID 18057039
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_123294.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
  
enables UDP-glucose 6-dehydrogenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-glucuronate biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in UDP-glucuronate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
UDP-glucose 6-dehydrogenase family protein
NP_198748.1
  • UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13476 Blast hits to 13452 proteins in 2147 species: Archae - 313; Bacteria - 7039; Metazoa - 213; Fungi - 97; Plants - 213; Viruses - 14; Other Eukaryotes - 5587 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15742543..15744946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123294.4 → NP_198748.1  UDP-glucose 6-dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198748.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84MD5, Q9FM01
    UniProtKB/TrEMBL
    A0A178UJQ6, A0A178VPC3, A0A5S9XH23, A0A5S9Y9V7
    Conserved Domains (1) summary
    PLN02353
    Location:1 → 473
    PLN02353; probable UDP-glucose 6-dehydrogenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FM01.1

Gene LinkOut

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