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GER2 germin-like protein 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833914, updated on 18-Sep-2024

Summary

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Official Symbol
GER2
Official Full Name
germin-like protein 2
Primary source
TAIR:AT5G39190
Locus tag
AT5G39190
See related
Araport:AT5G39190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA GERMIN LIKE PROTEIN 2; ATGER2; germin-like protein 2; GERMIN-LIKE PROTEIN 2A; GLP2A; K3K3.40; K3K3_40
Summary
germin-like protein (GLP2a)
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Genomic context

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See GER2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (15692542..15693735, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene pseudo Neighboring gene myb-like protein Q Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana germin-like proteins: common and specific features point to a variety of functions. Membré N, et al. Planta, 2000 Aug. PMID 10987552
  2. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001125862.1
NM_123281.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
NOT enables oxalate oxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
germin-like protein 2
NP_001119334.1
  • germin-like protein 2 (GER2); CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39160.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_198735.1
  • germin-like protein 2 (GER2); CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39160.1); Has 1499 Blast hits to 1493 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 31; Plants - 1451; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15692542..15693735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123281.4 → NP_198735.1  germin-like protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198735.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P92996, Q39106
    UniProtKB/TrEMBL
    A0A178UC48, A0A654G6F0, A0A7G2FG58
    Conserved Domains (1) summary
    cd02241
    Location:24 → 219
    cupin_OxOx; Oxalate oxidase (germin), cupin domain

  2. NM_001125862.1 → NP_001119334.1  germin-like protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119334.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H5Q0, B9DGM5
    Conserved Domains (1) summary
    pfam00190
    Location:41 → 191
    Cupin_1; Cupin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P92996.1

Gene LinkOut

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