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RmlC-like cupins superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833906, updated on 18-Sep-2024

Summary

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Official Full Name
RmlC-like cupins superfamily protein
Primary source
TAIR:AT5G39130
Locus tag
AT5G39130
See related
Araport:AT5G39130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXF12.140; MXF12_140
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (15665502..15666472, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene myb-like protein Q Neighboring gene RmlC-like cupins superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_123275.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RmlC-like cupins superfamily protein
NP_198729.1
  • RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 2 (TAIR:AT5G39190.1); Has 1495 Blast hits to 1489 proteins in 85 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 27; Plants - 1451; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15665502..15666472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123275.4 → NP_198729.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198729.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIC8
    UniProtKB/TrEMBL
    A0A5S9YAA8, A0A654G797
    Conserved Domains (1) summary
    cd02241
    Location:24 → 219
    cupin_OxOx; Oxalate oxidase (germin), cupin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIC8.1

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