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Rhomboid-related intramembrane serine protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833839, updated on 18-Sep-2024

Summary

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Official Full Name
Rhomboid-related intramembrane serine protease family protein
Primary source
TAIR:AT5G38510
Locus tag
AT5G38510
See related
Araport:AT5G38510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MBB18.4; MBB18_4
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (15417636..15420638, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene B3 domain protein (DUF313) Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene tryptophan synthase beta type 2 Neighboring gene Mannose-binding lectin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085212.2
NM_001344253.1
NM_123212.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Rhomboid-related intramembrane serine protease family protein
NP_001078681.1
  • Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 10 (TAIR:AT1G25290.2); Has 3625 Blast hits to 3625 proteins in 1267 species: Archae - 59; Bacteria - 2289; Metazoa - 237; Fungi - 114; Plants - 278; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).
NP_198667.1
  • Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 10 (TAIR:AT1G25290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15417636..15420638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085212.2 → NP_001078681.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078681.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFX0
    UniProtKB/TrEMBL
    A0A178UMM7, A0A5S9Y916, A0A654G628
    Conserved Domains (1) summary
    pfam01694
    Location:225 → 367
    Rhomboid; Rhomboid family

  2. NM_123212.3 → NP_198667.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198667.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFX0
    UniProtKB/TrEMBL
    A0A178UMM7, A0A5S9Y916, A0A654G628
    Conserved Domains (1) summary
    pfam01694
    Location:225 → 367
    Rhomboid; Rhomboid family

  3. NM_001344253.1 → NP_001330612.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFX0
    UniProtKB/TrEMBL
    A0A178UMM7, A0A5S9Y916, A0A654G628
    Conserved Domains (1) summary
    pfam01694
    Location:225 → 367
    Rhomboid; Rhomboid family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FFX0.1

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