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4CL8 AMP-dependent synthetase and ligase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833792, updated on 18-Sep-2024

Summary

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Official Symbol
4CL8
Official Full Name
AMP-dependent synthetase and ligase family protein
Primary source
TAIR:AT5G38120
Locus tag
AT5G38120
See related
Araport:AT5G38120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXA21.2; MXA21_2
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Genomic context

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See 4CL8 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (15213593..15216205)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene anti- silencing function 1b Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene nuclear factor Y, subunit C12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis 4-COUMAROYL-COA LIGASE 8 contributes to the biosynthesis of the benzenoid ring of coenzyme Q in peroxisomes. Soubeyrand E, et al. Biochem J, 2019 Nov 29. PMID 31688904
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001344230.1
NM_123172.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 4-coumarate-CoA ligase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables CoA-ligase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within ubiquinone biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
AMP-dependent synthetase and ligase family protein
NP_198628.2
  • AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 83515 Blast hits to 76136 proteins in 3676 species: Archae - 1169; Bacteria - 53948; Metazoa - 3493; Fungi - 4649; Plants - 2738; Viruses - 1; Other Eukaryotes - 17517 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15213593..15216205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344228.1 → NP_001331963.1  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMS5, A0A1P8BFI3

  2. NM_001344229.1 → NP_001331962.1  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFF5, A0A5S9Y901

  3. NM_123172.4 → NP_198628.2  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198628.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84P26, Q8GXU2, Q9FF44
    UniProtKB/TrEMBL
    A0A5S9Y901
    Conserved Domains (2) summary
    cd05904
    Location:33 → 542
    4CL; 4-Coumarate-CoA Ligase (4CL)
    PLN02574
    Location:17 → 542
    PLN02574; 4-coumarate--CoA ligase-like

  4. NM_001344230.1 → NP_001331964.1  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMS5, A0A1P8BFI3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84P26.2

Gene LinkOut

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