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Protein with RING/U-box and TRAF-like domain [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833770, updated on 18-Sep-2024

Summary

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Official Full Name
Protein with RING/U-box and TRAF-like domain
Primary source
TAIR:AT5G37910
Locus tag
AT5G37910
See related
Araport:AT5G37910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K18L3.11; K18L3_11
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (15096210..15097318, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein with RING/U-box and TRAF-like domain Neighboring gene TRAF-like superfamily protein Neighboring gene ncRNA Neighboring gene hypothetical protein (DUF577)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein with RING/U-box and TRAF-like domain
NP_198607.1
  • Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15096210..15097318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123150.1 → NP_198607.1  Protein with RING/U-box and TRAF-like domain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198607.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKD5
    UniProtKB/TrEMBL
    A0A5S9Y9E8, A0A654G698
    Conserved Domains (1) summary
    cl19105
    Location:81 → 233
    Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FKD5.1

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