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ZPR1 zinc-finger domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833708, updated on 18-Sep-2024

Summary

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Official Full Name
ZPR1 zinc-finger domain protein
Primary source
TAIR:AT5G37340
Locus tag
AT5G37340
See related
Araport:AT5G37340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNJ8.130; MNJ8_130
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (14787247..14792818, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF674) Neighboring gene pseudo Neighboring gene Serine/threonine-protein kinase Rio1 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203500.2
NM_001344182.1
NM_123093.4
NM_203127.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ZPR1 zinc-finger domain protein
NP_001190429.1
  • ZPR1 zinc-finger domain protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: ZPR1 zinc-finger domain protein (TAIR:AT5G22480.1).
NP_198550.3
  • ZPR1 zinc-finger domain protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: ZPR1 zinc-finger domain protein (TAIR:AT5G22480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974856.1
  • ZPR1 zinc-finger domain protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: ZPR1 zinc-finger domain protein (TAIR:AT5G22480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    14787247..14792818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203500.2 → NP_001190429.1  ZPR1 zinc-finger domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190429.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEH4, A0A654G5P7, A4VCM4
    Conserved Domains (2) summary
    smart00709
    Location:33 → 193
    Zpr1; Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins
    pfam03367
    Location:284 → 442
    zf-ZPR1; ZPR1 zinc-finger domain

  2. NM_001344182.1 → NP_001331606.1  ZPR1 zinc-finger domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEH4, A0A1P8BED3

  3. NM_203127.1 → NP_974856.1  ZPR1 zinc-finger domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974856.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEH4, F4K746
    Conserved Domains (2) summary
    smart00709
    Location:33 → 193
    Zpr1; Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins
    pfam03367
    Location:284 → 447
    zf-ZPR1; ZPR1 zinc-finger domain

  4. NM_123093.4 → NP_198550.3  ZPR1 zinc-finger domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198550.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEH4, A0A654G5P7, A4VCM4
    Conserved Domains (2) summary
    smart00709
    Location:33 → 193
    Zpr1; Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins
    pfam03367
    Location:284 → 442
    zf-ZPR1; ZPR1 zinc-finger domain
Nucleotide Protein
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