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NHL25 NDR1/HIN1-like 25 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833667, updated on 18-Sep-2024

Summary

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Official Symbol
NHL25
Official Full Name
NDR1/HIN1-like 25
Primary source
TAIR:AT5G36970
Locus tag
AT5G36970
See related
Araport:AT5G36970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MLF18.15; MLF18_15; NDR1/HIN1-like 25
Summary
NDR1/HIN1-like protein, expression induced during incompatible response to a pathogen, expression is at least partly dependent on the salicylic acid signaling pathway
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Genomic context

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See NHL25 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (14604199..14605310, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DegP protease 10 Neighboring gene uncharacterized protein Neighboring gene U3 small nucleolar RNA-associated protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. NHL25 and NHL3, two NDR1/HIN1-1ike genes in Arabidopsis thaliana with potential role(s) in plant defense. Varet A, et al. Mol Plant Microbe Interact, 2002 Jun. PMID 12059109
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to other organism IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within salicylic acid mediated signaling pathway IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NDR1/HIN1-like 25
NP_198513.1
  • NDR1/HIN1-like 25 (NHL25); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response, incompatible interaction, salicylic acid mediated signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G65690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    14604199..14605310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123055.2 → NP_198513.1  NDR1/HIN1-like 25 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198513.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFH9, A0A5S9Y8K6, F4K5V1
Nucleotide Protein
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