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proton pump-interactor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833634, updated on 18-Sep-2024

Summary

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Official Full Name
proton pump-interactor
Primary source
TAIR:AT5G36690
Locus tag
AT5G36690
See related
Araport:AT5G36690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
AT5G36690 and AT5G36780 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (14415185..14417288, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pol-like polyprotein/retrotransposon, putative (DUF239) Neighboring gene pseudo Neighboring gene 2-phosphoglycolate phosphatase 1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_123026.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of proton transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
proton pump-interactor
NP_198484.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    14415185..14417288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123026.2 → NP_198484.2  proton pump-interactor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198484.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K4G8, P0DKC0, P0DKC1, Q9LDQ8
    UniProtKB/TrEMBL
    A0A654G5H3
    Conserved Domains (1) summary
    pfam02463
    Location:81 → 254
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DKC0.1
P0DKC1.1

Gene LinkOut

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