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zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833621, updated on 18-Sep-2024

Summary

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Official Full Name
zinc knuckle (CCHC-type) family protein
Primary source
TAIR:AT5G36240
Locus tag
AT5G36240
See related
Araport:AT5G36240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30G6.10; T30G6_10
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (14277972..14278924, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nucleic acid binding / zinc ion binding protein Neighboring gene ARM repeat superfamily protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene Eukaryotic aspartyl protease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_123015.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc knuckle (CCHC-type) family protein
NP_198473.1
  • zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G43590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    14277972..14278924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123015.1 → NP_198473.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198473.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHT7, Q9FG62
    Conserved Domains (1) summary
    PTZ00368
    Location:27 → 213
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
Nucleotide Protein
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