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Defensin-like (DEFL) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833312, updated on 18-Sep-2024

Summary

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Official Full Name
Defensin-like (DEFL) family protein
Primary source
TAIR:AT5G33355
Locus tag
AT5G33355
See related
Araport:AT5G33355
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes a defensin-like (DEFL) family protein.
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (12599250..12599944)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene pseudo Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Zinc deficiency-induced defensin-like proteins are involved in the inhibition of root growth in Arabidopsis. Kimura S, et al. Plant J, 2023 Aug. PMID 37177878
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_147989.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to zinc ion starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in stress response to metal ion IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Defensin-like (DEFL) family protein
NP_680294.1
  • Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    12599250..12599944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_147989.3 → NP_680294.1  Defensin-like (DEFL) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_680294.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E8R5
    UniProtKB/TrEMBL
    A0A178UAK0, A0A5S9XMC4, A0A5S9Y843
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3E8R5.1

Gene LinkOut

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Molecular Biology Databases
Research Materials