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Fcf2 pre-rRNA processing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833073, updated on 18-Sep-2024

Summary

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Official Full Name
Fcf2 pre-rRNA processing protein
Primary source
TAIR:AT5G30495
Locus tag
AT5G30495
See related
Araport:AT5G30495
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (11379907..11381657)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_147961.4
NM_180760.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Fcf2 pre-rRNA processing protein
NP_680266.2
  • Fcf2 pre-rRNA processing protein; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: Fcf2 pre-rRNA processing protein (TAIR:AT1G54770.1); Has 334 Blast hits to 334 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
NP_851091.1
  • Fcf2 pre-rRNA processing protein; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: Fcf2 pre-rRNA processing protein (TAIR:AT1G54770.1); Has 334 Blast hits to 334 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    11379907..11381657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_147961.4 → NP_680266.2  Fcf2 pre-rRNA processing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_680266.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKZ6, F4KCY1
    Conserved Domains (1) summary
    pfam08698
    Location:71 → 165
    Fcf2; Fcf2 pre-rRNA processing

  2. NM_180760.2 → NP_851091.1  Fcf2 pre-rRNA processing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851091.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKZ6, F4KCY1
    Conserved Domains (1) summary
    pfam08698
    Location:71 → 165
    Fcf2; Fcf2 pre-rRNA processing
Nucleotide Protein
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