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Major facilitator superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832936, updated on 18-Sep-2024

Summary

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Official Full Name
Major facilitator superfamily protein
Primary source
TAIR:AT5G28470
Locus tag
AT5G28470
See related
Araport:AT5G28470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24J2.10; F24J2_10
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (10428733..10432407)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Tapetal Major Facilitator NPF2.8 Is Required for Accumulation of Flavonol Glycosides on the Pollen Surface in Arabidopsis thaliana. Grunewald S, et al. Plant Cell, 2020 May. PMID 32156687, Free PMC Article
  2. Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil. Qin Y, et al. PLoS Genet, 2009 Aug. PMID 19714218, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_122730.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within pollen exine formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen tube growth IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Major facilitator superfamily protein
NP_198199.2
  • Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, pollen tube growth; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, sepal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.7 (TAIR:AT1G69870.1); Has 3642 Blast hits to 3525 proteins in 525 species: Archae - 0; Bacteria - 558; Metazoa - 480; Fungi - 335; Plants - 2158; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    10428733..10432407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344071.1 → NP_001332604.1  Major facilitator superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHI2, A0A5S9Y8G0, A0A654G534

  2. NM_122730.3 → NP_198199.2  Major facilitator superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198199.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1PDS5, Q3E8X3
    UniProtKB/TrEMBL
    A0A178UK58
    Conserved Domains (2) summary
    COG3104
    Location:6 → 509
    PTR2; Dipeptide/tripeptide permease [Amino acid transport and metabolism]
    cl21472
    Location:89 → 514
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3E8X3.2

Gene LinkOut

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