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RECQSIM RECQ helicase SIM [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832830, updated on 18-Sep-2024

Summary

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Official Symbol
RECQSIM
Official Full Name
RECQ helicase SIM
Primary source
TAIR:AT5G27680
Locus tag
AT5G27680
See related
Araport:AT5G27680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RECQ helicase SIM; T1G16.10; T1G16_10
Summary
DNA helicase
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Genomic context

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See RECQSIM in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Sequence:
Chromosome: 5; NC_003076.8 (9793745..9799149, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Trypsin family protein with PDZ domain-containing protein Neighboring gene histone H2A 7 Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Ribosomal protein S21e

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RecQ gene family in plants. Hartung F, et al. J Plant Physiol, 2006 Feb. PMID 16371241
  2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001344027.1
NM_001344029.1
NM_001344030.1
NM_001344031.1
NM_122650.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA duplex unwinding IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  
involved_in DNA repair IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RECQ helicase SIM
NP_568499.1
  • RECQ helicase SIM (RECQSIM); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9793745..9799149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344028.1 → NP_001330796.1  RECQ helicase SIM [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FT69
    UniProtKB/TrEMBL
    A0A5S9Y833
    Conserved Domains (5) summary
    smart00487
    Location:162 → 355
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:486 → 600
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:170 → 341
    DEAD; DEAD/DEAH box helicase
    pfam16124
    Location:612 → 663
    RecQ_Zn_bind; RecQ zinc-binding
    cl21463
    Location:8 → 42
    UBA_like_SF; UBA domain-like superfamily

  2. NM_122650.5 → NP_568499.1  RECQ helicase SIM [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568499.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FT69
    UniProtKB/TrEMBL
    A0A5S9Y833
    Conserved Domains (5) summary
    smart00487
    Location:162 → 355
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:486 → 600
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:170 → 341
    DEAD; DEAD/DEAH box helicase
    pfam16124
    Location:612 → 663
    RecQ_Zn_bind; RecQ zinc-binding
    cl21463
    Location:8 → 42
    UBA_like_SF; UBA domain-like superfamily

  3. NM_001344027.1 → NP_001330792.1  RECQ helicase SIM [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FT69
    UniProtKB/TrEMBL
    A0A5S9Y833
    Conserved Domains (5) summary
    smart00487
    Location:162 → 355
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:486 → 600
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:170 → 341
    DEAD; DEAD/DEAH box helicase
    pfam16124
    Location:612 → 663
    RecQ_Zn_bind; RecQ zinc-binding
    cl21463
    Location:8 → 42
    UBA_like_SF; UBA domain-like superfamily

  4. NM_001344029.1 → NP_001330794.1  RECQ helicase SIM [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FT69
    UniProtKB/TrEMBL
    A0A5S9Y833
    Conserved Domains (5) summary
    smart00487
    Location:162 → 355
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:486 → 600
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:170 → 341
    DEAD; DEAD/DEAH box helicase
    pfam16124
    Location:612 → 663
    RecQ_Zn_bind; RecQ zinc-binding
    cl21463
    Location:8 → 42
    UBA_like_SF; UBA domain-like superfamily

  5. NM_001344030.1 → NP_001330793.1  RECQ helicase SIM [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBY3, A0A5S9Y833

  6. NM_001344031.1 → NP_001330795.1  RECQ helicase SIM [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBY0, A0A5S9Y833
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FT69.1

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