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ALY1 protein ALWAYS EARLY 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832823, updated on 18-Sep-2024

Summary

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Official Symbol
ALY1
Official Full Name
protein ALWAYS EARLY 1
Primary source
TAIR:AT5G27610
Locus tag
AT5G27610
See related
Araport:AT5G27610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ALWAYS EARLY 1; ARABIDOPSIS THALIANA ALWAYS EARLY 1; ATALY1; F15A18.70; F15A18_70
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Genomic context

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See ALY1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
18
Sequence:
Chromosome: 5; NC_003076.8 (9764135..9769992)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene JAB1/Mov34/MPN/PAD-1 ubiquitin protease Neighboring gene cyclin H;1 Neighboring gene acyl-CoA binding protein 5 Neighboring gene translation initiation factor 3B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Pfaff C, et al. Plant Physiol, 2018 May. PMID 29540591, Free PMC Article
  2. DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. Ning YQ, et al. Nat Plants, 2020 Aug. PMID 32661276
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ALY1 plays a role in mRNA export and that the efficient nucleocytosolic transport of mRNAs is a requirement for proper plant growth and development.
    Title: ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of DRM complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
protein ALWAYS EARLY 1
NP_198113.2
  • ALWAYS EARLY 1 (ALY1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT3G05380.4); Has 727 Blast hits to 616 proteins in 109 species: Archae - 0; Bacteria - 13; Metazoa - 449; Fungi - 28; Plants - 134; Viruses - 1; Other Eukaryotes - 102 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9764135..9769992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122643.3 → NP_198113.2  protein ALWAYS EARLY 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198113.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SVR1, Q6A331
    UniProtKB/TrEMBL
    A0A654G4W2
    Conserved Domains (2) summary
    cd00167
    Location:45 → 90
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam06584
    Location:559 → 659
    DIRP; DIRP
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6A331.2

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