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DUF1995 domain protein, putative (DUF1995) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832816, updated on 18-Sep-2024

Summary

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Official Full Name
DUF1995 domain protein, putative (DUF1995)
Primary source
TAIR:AT5G27560
Locus tag
AT5G27560
See related
Araport:AT5G27560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15A18.20; F15A18_20
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (9731512..9734473)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene MIRO-related GTP-ase 1 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene cell division cycle 20.2, cofactor of APC complex-like protein Neighboring gene AGAMOUS-like 89

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001344016.1
NM_001344017.1
NM_122638.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
DUF1995 domain protein, putative (DUF1995)
NP_568497.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9731512..9734473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344015.1 → NP_001332625.1  DUF1995 domain protein, putative (DUF1995) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPT1, A0A1R7T377

  2. NM_122638.4 → NP_568497.1  DUF1995 domain protein, putative (DUF1995) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568497.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPT1, Q94K68
    Conserved Domains (1) summary
    pfam09353
    Location:97 → 303
    DUF1995; Domain of unknown function (DUF1995)

  3. NM_001344016.1 → NP_001332626.1  DUF1995 domain protein, putative (DUF1995) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPT1, Q94K68

  4. NM_001344017.1 → NP_001332627.1  DUF1995 domain protein, putative (DUF1995) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPT1, Q94K68
Nucleotide Protein
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