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Zim17-type zinc finger protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832786, updated on 18-Sep-2024

Summary

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Official Full Name
Zim17-type zinc finger protein
Primary source
TAIR:AT5G27280
Locus tag
AT5G27280
See related
Araport:AT5G27280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21A20.2
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (9617440..9618481)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Myb/SANT-like DNA-binding domain protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene stress regulated protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene Transcription factor IIS family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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NM_122610.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zim17-type zinc finger protein
NP_198080.1
  • Zim17-type zinc finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: Zim17-type zinc finger protein (TAIR:AT1G68730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9617440..9618481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122610.3 → NP_198080.1  Zim17-type zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198080.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEB8, O04646, Q8LD12
    Conserved Domains (1) summary
    pfam05180
    Location:123 → 168
    zf-DNL; DNL zinc finger
Nucleotide Protein
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