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Cand8 Protein of unknown function, transmembrane-40 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832779, updated on 18-Sep-2024

Summary

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Official Symbol
Cand8
Official Full Name
Protein of unknown function, transmembrane-40
Primary source
TAIR:AT5G27210
Locus tag
AT5G27210
See related
Araport:AT5G27210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
candidate G-protein Coupled Receptor 8; T21B4.120; T21B4_120
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Genomic context

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See Cand8 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (9572066..9574135, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene acyl carrier protein 5 Neighboring gene Frigida-like protein Neighboring gene Frigida-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in-vivo protein coupling. Gookin TE, et al. Genome Biol, 2008. PMID 18671868, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122603.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein of unknown function, transmembrane-40
NP_198073.1
  • Protein of unknown function, transmembrane-40; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: Protein of unknown function, transmembrane-40 (TAIR:AT3G05010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9572066..9574135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122603.2 → NP_198073.1  Protein of unknown function, transmembrane-40 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198073.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K2U8, O04651, Q8L8S4, Q94BV6
    UniProtKB/TrEMBL
    A0A178UGN2, A0A5S9Y7P2, A0A654G4T6
    Conserved Domains (1) summary
    pfam10160
    Location:30 → 284
    Tmemb_40; Predicted membrane protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4K2U8.1

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