U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832687, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Primary source
TAIR:AT5G26180
Locus tag
AT5G26180
See related
Araport:AT5G26180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19G15.30; T19G15_30
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
14
Sequence:
Chromosome: 5; NC_003076.8 (9149073..9153503)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene light-independent protochlorophyllide reductase subunit Neighboring gene WRKY DNA-binding protein 50 Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene alfin-like 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001343965.1
NM_001343966.1
NM_001343967.1
NM_122519.3
NM_180748.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NP_197990.2
  • S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 8801 Blast hits to 8742 proteins in 2315 species: Archae - 360; Bacteria - 6022; Metazoa - 655; Fungi - 388; Plants - 256; Viruses - 1; Other Eukaryotes - 1119 (source: NCBI BLink).
NP_851079.1
  • S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 8753 Blast hits to 8694 proteins in 2304 species: Archae - 360; Bacteria - 5976; Metazoa - 655; Fungi - 386; Plants - 256; Viruses - 1; Other Eukaryotes - 1119 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9149073..9153503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122519.3 → NP_197990.2  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197990.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYE8
    UniProtKB/TrEMBL
    A0A178UPY1
    Conserved Domains (1) summary
    COG0144
    Location:232 → 511
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  2. NM_180748.2 → NP_851079.1  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851079.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYE8
    UniProtKB/TrEMBL
    A0A178UPY1
    Conserved Domains (1) summary
    COG0144
    Location:232 → 511
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  3. NM_001343965.1 → NP_001331920.1  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYE8
    UniProtKB/TrEMBL
    A0A178UPY1
    Conserved Domains (1) summary
    COG0144
    Location:232 → 511
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  4. NM_001343966.1 → NP_001331922.1  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYE8
    UniProtKB/TrEMBL
    A0A178UPY1
    Conserved Domains (1) summary
    COG0144
    Location:232 → 511
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  5. NM_001343967.1 → NP_001331921.1  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYE8
    UniProtKB/TrEMBL
    A0A178UPY1
    Conserved Domains (1) summary
    COG0144
    Location:232 → 511
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYE8.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools