U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHY-type/CTCHY-type/RING-type Zinc finger protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832631, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
CHY-type/CTCHY-type/RING-type Zinc finger protein
Primary source
TAIR:AT5G25560
Locus tag
AT5G25560
See related
Araport:AT5G25560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T14C9.100; T14C9_100
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (8897797..8901740)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CTC-interacting domain 6 Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene polyamine-modulated factor 1-binding protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Ubiquitin E3 ligase AtCHYR2 functions in glucose regulation of germination and post-germinative growth in Arabidopsis thaliana. Wang S, et al. Plant Cell Rep, 2023 Jun. PMID 36991149
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001203468.2
NM_001343939.1
NM_001343940.1
NM_001343942.1
NM_122467.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in glucose mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CHY-type/CTCHY-type/RING-type Zinc finger protein
NP_001190397.1
  • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1).
NP_001318649.1
  • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 943 Blast hits to 942 proteins in 169 species: Archae - 2; Bacteria - 0; Metazoa - 357; Fungi - 128; Plants - 310; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
NP_001318650.1
  • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1).
NP_197938.2
  • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8897797..8901740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343941.1 → NP_001331056.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
    Conserved Domains (4) summary
    cd00162
    Location:199 → 241
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    pfam05495
    Location:63 → 145
    zf-CHY; CHY zinc finger
    pfam14599
    Location:246 → 304
    zinc_ribbon_6; Zinc-ribbon
    cl17238
    Location:198 → 242
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. NM_001203468.2 → NP_001190397.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190397.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y750, F4JY61
    Conserved Domains (4) summary
    cd00162
    Location:194 → 236
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    pfam05495
    Location:61 → 140
    zf-CHY; CHY zinc finger
    pfam14599
    Location:241 → 299
    zinc_ribbon_6; Zinc-ribbon
    cl17238
    Location:193 → 237
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. NM_001343939.1 → NP_001318649.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
    Conserved Domains (4) summary
    cd00162
    Location:199 → 241
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    pfam05495
    Location:63 → 145
    zf-CHY; CHY zinc finger
    pfam14599
    Location:246 → 304
    zinc_ribbon_6; Zinc-ribbon
    cl17238
    Location:198 → 242
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  4. NM_122467.5 → NP_197938.2  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197938.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
    Conserved Domains (4) summary
    cd00162
    Location:199 → 241
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    pfam05495
    Location:63 → 145
    zf-CHY; CHY zinc finger
    pfam14599
    Location:246 → 304
    zinc_ribbon_6; Zinc-ribbon
    cl17238
    Location:198 → 242
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  5. NM_001343942.1 → NP_001331055.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
    Conserved Domains (4) summary
    cd00162
    Location:199 → 241
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    pfam05495
    Location:63 → 145
    zf-CHY; CHY zinc finger
    pfam14599
    Location:246 → 304
    zinc_ribbon_6; Zinc-ribbon
    cl17238
    Location:198 → 242
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  6. NM_001343940.1 → NP_001318650.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y750, F4JY59
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.