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RRC1 RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832577, updated on 18-Sep-2024

Summary

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Official Symbol
RRC1
Official Full Name
RNA recognition motif (RRM)-containing protein
Primary source
TAIR:AT5G25060
Locus tag
AT5G25060
See related
Araport:AT5G25060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
reduced red-light responses in cry1cry2 background 1; T11H3.70; T11H3_70
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Genomic context

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See RRC1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (8633114..8640217, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Major facilitator superfamily protein Neighboring gene neurofilament light protein Neighboring gene Sas10/Utp3/C1D family Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Epidermal phyB requires RRC1 to promote light responses by activating the circadian rhythm. Kim H, et al. New Phytol, 2023 Apr. PMID 36651061
  2. Deletion of the RS domain of RRC1 impairs phytochrome B signaling in Arabidopsis. Shikata H, et al. Plant Signal Behav, 2012 Aug. PMID 22751357, Free PMC Article
  3. The RS domain of Arabidopsis splicing factor RRC1 is required for phytochrome B signal transduction. Shikata H, et al. Plant J, 2012 Jun. PMID 22324426
  4. SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis in Arabidopsis. Kathare PK, et al. Proc Natl Acad Sci U S A, 2022 Nov. PMID 36282917, Free PMC Article
  5. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Epidermal phyB requires RRC1 to promote light responses by activating the circadian rhythm.
    Title: Epidermal phyB requires RRC1 to promote light responses by activating the circadian rhythm.
  2. Deletion of the RS domain of RRC1 reduces phyB signaling, probably due to aberrant regulation of alternative splicing of target genes. [RRC1]
    Title: Deletion of the RS domain of RRC1 impairs phytochrome B signaling in Arabidopsis.
  3. Deletion of the RS domain of RRC1 (reduced red-light responses in cry1cry2 background 1), reduces phytochrome B-mediated light responses in a phytochrome B-dependent manner.
    Title: The RS domain of Arabidopsis splicing factor RRC1 is required for phytochrome B signal transduction.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122415.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA recognition motif (RRM)-containing protein
NP_568464.1
  • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), mRNA splicing factor, Cwf21 (InterPro:IPR013170), ENTH/VHS (InterPro:IPR008942), SWAP/Surp (InterPro:IPR000061), DNA-binding SAP (InterPro:IPR003034), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G10800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8633114..8640217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122415.2 → NP_568464.1  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568464.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C5J3
    UniProtKB/TrEMBL
    A0A178UL94, A0A5S9Y794
    Conserved Domains (4) summary
    pfam01805
    Location:329 → 379
    Surp; Surp module
    cd12223
    Location:178 → 261
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21371
    Location:791 → 840
    cwf21_RRC1-like; cwf21 domain found in Arabidopsis thaliana protein RRC1 and similar proteins
    cl02544
    Location:444 → 579
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C5J3.1

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