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VSP2 vegetative storage protein 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832546, updated on 18-Sep-2024

Summary

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Official Symbol
VSP2
Official Full Name
vegetative storage protein 2
Primary source
TAIR:AT5G24770
Locus tag
AT5G24770
See related
Araport:AT5G24770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATVSP2; T4C12.40; vegetative storage protein 2; VEGETATIVE STORAGE PROTEIN 2
Summary
Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.
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Genomic context

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See VSP2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (8500468..8502224, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene GroES-like zinc-binding dehydrogenase family protein Neighboring gene pseudo Neighboring gene vegetative storage protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Stability of AtVSP in the insect digestive canal determines its defensive capability. Chi YH, et al. J Insect Physiol, 2011 Mar. PMID 21192943
  2. Arabidopsis vegetative storage protein is an anti-insect acid phosphatase. Liu Y, et al. Plant Physiol, 2005 Nov. PMID 16258019, Free PMC Article
  3. Expression of a vegetative-storage-protein gene from Arabidopsis is regulated by copper, senescence and ozone. Mira H, et al. Planta, 2002 Apr. PMID 11941471
  4. Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants. Gong Z, et al. Plant Physiol, 2001 May. PMID 11351099, Free PMC Article
  5. The crystal structure of Arabidopsis VSP1 reveals the plant class C-like phosphatase structure of the DDDD superfamily of phosphohydrolases. Chen Y, et al. PLoS One, 2012. PMID 23166664, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Stability of AtVSP2 in the insect digestive canal determines its defensive capability.
    Title: Stability of AtVSP in the insect digestive canal determines its defensive capability.
  2. VSP2 is an anti-insect protein and that its defense function is correlated with its acid phosphatase activity
    Title: Arabidopsis vegetative storage protein is an anti-insect acid phosphatase.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036860.1
NM_122386.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables acid phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to insect IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within hyperosmotic salinity response IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to copper ion IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to insect IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to jasmonic acid TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to oxidative stress IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosolic ribosome HDA PubMed 
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
vegetative storage protein 2
NP_001031937.1
  • vegetative storage protein 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: vegetative storage protein 1 (TAIR:AT5G24780.2); Has 337 Blast hits to 336 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_568454.1
  • vegetative storage protein 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: vegetative storage protein 1 (TAIR:AT5G24780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8500468..8502224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122386.4 → NP_568454.1  vegetative storage protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568454.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23828, O82122
    UniProtKB/TrEMBL
    A0A654G3U3, A0A7G2FH16
    Conserved Domains (1) summary
    TIGR01675
    Location:37 → 264
    plant-AP; plant acid phosphatase

  2. NM_001036860.1 → NP_001031937.1  vegetative storage protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031937.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KII6
    Conserved Domains (1) summary
    cl21460
    Location:37 → 208
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O82122.1

Gene LinkOut

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