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Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832542, updated on 18-Sep-2024

Summary

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Official Full Name
Transducin/WD40 repeat-like superfamily protein
Primary source
TAIR:AT5G24710
Locus tag
AT5G24710
See related
Araport:AT5G24710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXC17.10; MXC17_10
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Genomic context

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Location:
chromosome: 5
Exon count:
21
Sequence:
Chromosome: 5; NC_003076.8 (8458847..8468173, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 Neighboring gene plant/protein, putative (DUF3411) Neighboring gene ncRNA Neighboring gene vacuolar protein sorting-associated protein, putative (DUF1162)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The TWD40-2 protein and the AP2 complex cooperate in the clathrin-mediated endocytosis of cellulose synthase to regulate cellulose biosynthesis. Bashline L, et al. Proc Natl Acad Sci U S A, 2015 Oct 13. PMID 26417106, Free PMC Article
  2. The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants. Gadeyne A, et al. Cell, 2014 Feb 13. PMID 24529374
  3. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_122380.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in clathrin-dependent endocytosis IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Transducin/WD40 repeat-like superfamily protein
NP_197859.4
  • Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 53337 Blast hits to 28879 proteins in 1972 species: Archae - 196; Bacteria - 12524; Metazoa - 15998; Fungi - 8175; Plants - 2336; Viruses - 1195; Other Eukaryotes - 12913 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8458847..8468173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122380.4 → NP_197859.4  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197859.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G4M2, F4KIH8, Q0WLS8
    Conserved Domains (4) summary
    PRK10811
    Location:1195 → 1356
    rne; ribonuclease E; Reviewed
    PRK14950
    Location:1002 → 1292
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    sd00039
    Location:216 → 261
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:11 → 294
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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