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LSU2 response to low sulfur 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832538, updated on 18-Sep-2024

Summary

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Official Symbol
LSU2
Official Full Name
response to low sulfur 2
Primary source
TAIR:AT5G24660
Locus tag
AT5G24660
See related
Araport:AT5G24660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXC17.2; MXC17_2; RESPONSE TO LOW SULFUR 2
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Genomic context

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See LSU2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (8443279..8444101, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene response to low sulfur 4 Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 Neighboring gene plant/protein, putative (DUF3411)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Luhua S, et al. Physiol Plant, 2013 Jul. PMID 23517122
  2. The family of LSU-like proteins. Sirko A, et al. Front Plant Sci, 2014. PMID 25628631, Free PMC Article
  3. A Revised View of the LSU Gene Family: New Functions in Plant Stress Responses and Phytohormone Signaling. Canales J, et al. Int J Mol Sci, 2023 Feb 1. PMID 36769138, Free PMC Article
  4. Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1. Wang H, et al. New Phytol, 2017 Aug. PMID 28656601, Free PMC Article
  5. Identification of a novel cis-acting element conferring sulfur deficiency response in Arabidopsis roots. Maruyama-Nakashita A, et al. Plant J, 2005 May. PMID 15842617

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. silencing of AtRAP by AtlsiRNA-1 upon bacterial infection triggers defense responses through regulation of LSU2 and GLK1.
    Title: Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122375.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular oxidant detoxification IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to sulfur starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in defense response to oomycetes IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of defense response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
response to low sulfur 2
NP_197854.1
  • RESPONSE TO LOW SULFUR 2 (LSU2); BEST Arabidopsis thaliana protein match is: response to low sulfur 4 (TAIR:AT5G24655.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8443279..8444101 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122375.3 → NP_197854.1  response to low sulfur 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197854.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIR9
    UniProtKB/TrEMBL
    A0A178UAC4, A0A5S9Y7G9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIR9.1

Gene LinkOut

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