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Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832533, updated on 18-Sep-2024

Summary

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Official Full Name
Pathogenesis-related thaumatin superfamily protein
Primary source
TAIR:AT5G24620
Locus tag
AT5G24620
See related
Araport:AT5G24620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K18P6.16; K18P6_16
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (8430004..8432414)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cyclic AMP-responsive element-binding protein Neighboring gene ncRNA Neighboring gene double-stranded DNA binding protein Neighboring gene uncharacterized protein Neighboring gene Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203456.1
NM_001343883.1
NM_001343884.1
NM_122370.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pathogenesis-related thaumatin superfamily protein
NP_001190385.1
  • Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT2G17860.1).
NP_197850.2
  • Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT2G17860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8430004..8432414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203456.1 → NP_001190385.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190385.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FDJ8, F4KH74
    Conserved Domains (1) summary
    cl02511
    Location:15 → 133
    GH64-TLP-SF; glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins

  2. NM_001343883.1 → NP_001332412.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQ39, A0A1P8BGX4, A0A5S9Y6Y6

  3. NM_001343884.1 → NP_001332413.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQ39, A0A1P8BGX9, A0A5S9Y6Y6

  4. NM_122370.2 → NP_197850.2  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197850.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQ39, A0A5S9Y6Y6, A0A654G3S4, B3LFC8
    Conserved Domains (1) summary
    cd09218
    Location:26 → 250
    TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs
Nucleotide Protein
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