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DUF9 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832443, updated on 18-Sep-2024

Summary

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Official Symbol
DUF9
Official Full Name
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9)
Primary source
TAIR:AT5G23780
Locus tag
AT5G23780
See related
Araport:AT5G23780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATDUF9; DOMAIN OF UNKNOWN FUNCTION 724 9; MRO11.18; MRO11_18
Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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Genomic context

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See DUF9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (8017111..8019520, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Remorin family protein Neighboring gene Copper transport protein family Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8) Neighboring gene galactinol synthase 5 Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001343824.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9)
NP_001318630.1
  • DOMAIN OF UNKNOWN FUNCTION 724 9 (DUF9); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 8 (TAIR:AT5G23770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8017111..8019520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343825.1 → NP_001331103.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCT9, A0A5S9Y6T0, A0A654G3K5
    Conserved Domains (3) summary
    pfam05266
    Location:253 → 422
    DUF724; Protein of unknown function (DUF724)
    cd20405
    Location:2 → 71
    Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
    cd20406
    Location:84 → 148
    Tudor_Agenet_AtDUF_rpt2_4; second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

  2. NM_001343824.1 → NP_001318630.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2H1ZE64, A0A654G3K5
    Conserved Domains (3) summary
    pfam05266
    Location:267 → 436
    DUF724; Protein of unknown function (DUF724)
    cd20405
    Location:16 → 85
    Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
    cd20406
    Location:98 → 162
    Tudor_Agenet_AtDUF_rpt2_4; second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
Nucleotide Protein
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