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RNA 2'-phosphotransferase, Tpt1 / KptA family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832426, updated on 18-Sep-2024

Summary

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Official Full Name
RNA 2'-phosphotransferase, Tpt1 / KptA family
Primary source
TAIR:AT5G23600
Locus tag
AT5G23600
See related
Araport:AT5G23600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQM1.13; MQM1_13
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (7955687..7956920)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene XS domain-containing protein / XS zinc finger domain-containing protein-like protein Neighboring gene Transmembrane CLPTM1 family protein Neighboring gene calmodulin-like domain protein kinase 9 Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene DYAD protein Neighboring gene phosphate deficiency response 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_122266.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables tRNA 2'-phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNA 2'-phosphotransferase, Tpt1 / KptA family
NP_197750.1
  • RNA 2'-phosphotransferase, Tpt1 / KptA family; FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT2G45330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7955687..7956920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122266.2 → NP_197750.1  RNA 2'-phosphotransferase, Tpt1 / KptA family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197750.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEG3, A0A5S9Y6M7, Q9LT04
    Conserved Domains (1) summary
    pfam01885
    Location:5 → 188
    PTS_2-RNA; RNA 2'-phosphotransferase, Tpt1 / KptA family
Nucleotide Protein
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